SRRM1

Protein-coding gene in the species Homo sapiens

SRRM1

Available structures

PDB

Ortholog search: PDBe RCSB

List of PDB id codes
1MP1

Identifiers

Aliases

SRRM1, 160-KD, POP101, SRM160, serine and arginine repetitive matrix 1

External IDs

OMIM: 605975; MGI: 1858303; HomoloGene: 136796; GeneCards: SRRM1; OMA:SRRM1 - orthologs

Gene location (Human)

Chr.	Chromosome 1 (human)^[1]

Band	1p36.11	Start	24,631,716 bp^[1]
Band	1p36.11	End	24,673,267 bp^[1]

Gene location (Mouse)

Chr.	Chromosome 4 (mouse)^[2]

Band	4\|4 D3	Start	135,320,484 bp^[2]
Band	4\|4 D3	End	135,353,321 bp^[2]

RNA expression pattern

Bgee

Human

Mouse (ortholog)

Top expressed in

corpus epididymis

sural nerve

caput epididymis

right uterine tube

left ovary

buccal mucosa cell

right ovary

body of uterus

tail of epididymis

right hemisphere of cerebellum

Top expressed in

tail of embryo

genital tubercle

primitive streak

Paneth cell

abdominal wall

neural layer of retina

ciliary body

Ileal epithelium

zygote

cumulus cell

More reference expression data

BioGPS


More reference expression data

Gene ontology
Molecular function	DNA binding protein binding RNA binding
Cellular component	nuclear matrix cytosol catalytic step 2 spliceosome spliceosomal complex nucleus nucleoplasm nuclear speck
Biological process	RNA splicing, via transesterification reactions mRNA splicing, via spliceosome termination of RNA polymerase II transcription mRNA processing mRNA 3'-end processing mRNA export from nucleus RNA splicing RNA export from nucleus
Sources:Amigo / QuickGO

Orthologs

Species

Human

Mouse

Entrez


10250


51796

Ensembl


ENSG00000133226


ENSMUSG00000028809

UniProt


Q8IYB3


Q52KI8

RefSeq (mRNA)


NM_001303448 NM_001303449 NM_005839

NM_001130477 NM_016799 NM_001369067 NM_001369068 NM_001369069
NM_001369070 NM_001369071 NM_001369072 NM_001369073 NM_001369074

RefSeq (protein)

NP_001290377 NP_001290378 NP_005830 NP_001353494 NP_001353495
NP_001353496 NP_001353497 NP_001353498 NP_001353499 NP_001353500 NP_001353501 NP_001353502 NP_001353504 NP_001353505 NP_001353506 NP_001353507 NP_001353510 NP_001353511 NP_001353513 NP_001353514 NP_001353515 NP_001353516 NP_001353517 NP_001353518 NP_001353519 NP_001353520 NP_001353521 NP_001353522 NP_001353523 NP_001353524 NP_001353525 NP_001353526 NP_001353527 NP_001353528 NP_001353529

NP_001123949 NP_058079 NP_001355996 NP_001355997 NP_001355998
NP_001355999 NP_001356000 NP_001356001 NP_001356002 NP_001356003

Location (UCSC)

Chr 1: 24.63 – 24.67 Mb

Chr 4: 135.32 – 135.35 Mb

PubMed search

^[3]

^[4]

Wikidata

View/Edit Human

View/Edit Mouse

Serine/arginine repetitive matrix protein 1 is a protein that in humans is encoded by the SRRM1 gene.^[5]^[6]

Interactions

SRRM1 has been shown to interact with CDC5L.^[7]

References

^ ^a ^b ^c GRCh38: Ensembl release 89: ENSG00000133226 – Ensembl, May 2017
^ ^a ^b ^c GRCm38: Ensembl release 89: ENSMUSG00000028809 – Ensembl, May 2017
^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
^ Blencowe BJ, Issner R, Nickerson JA, Sharp PA (May 1998). "A coactivator of pre-mRNA splicing". Genes Dev. 12 (7): 996–1009. doi:10.1101/gad.12.7.996. PMC 316672. PMID 9531537.
^ "Entrez Gene: SRRM1 serine/arginine repetitive matrix 1".
^ Ajuh P, Kuster B, Panov K, Zomerdijk JC, Mann M, Lamond AI (December 2000). "Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry". EMBO J. 19 (23): 6569–81. doi:10.1093/emboj/19.23.6569. PMC 305846. PMID 11101529.

Wang HY, Lin W, Dyck JA, Yeakley JM, Songyang Z, Cantley LC, Fu XD (1998). "SRPK2: a differentially expressed SR protein-specific kinase involved in mediating the interaction and localization of pre-mRNA splicing factors in mammalian cells". J. Cell Biol. 140 (4): 737–50. doi:10.1083/jcb.140.4.737. PMC 2141757. PMID 9472028.
Wilson KF, Fortes P, Singh US, Ohno M, Mattaj IW, Cerione RA (1999). "The nuclear cap-binding complex is a novel target of growth factor receptor-coupled signal transduction". J. Biol. Chem. 274 (7): 4166–73. doi:10.1074/jbc.274.7.4166. PMID 9933612.
Eldridge AG, Li Y, Sharp PA, Blencowe BJ (1999). "The SRm160/300 splicing coactivator is required for exon-enhancer function". Proc. Natl. Acad. Sci. U.S.A. 96 (11): 6125–30. Bibcode:1999PNAS...96.6125E. doi:10.1073/pnas.96.11.6125. PMC 26846. PMID 10339552.
Blencowe BJ, Baurén G, Eldridge AG, Issner R, Nickerson JA, Rosonina E, Sharp PA (2000). "The SRm160/300 splicing coactivator subunits". RNA. 6 (1): 111–20. doi:10.1017/S1355838200991982. PMC 1369899. PMID 10668804.
Le Hir H, Moore MJ, Maquat LE (2000). "Pre-mRNA splicing alters mRNP composition: evidence for stable association of proteins at exon-exon junctions". Genes Dev. 14 (9): 1098–108. doi:10.1101/gad.14.9.1098. PMC 316578. PMID 10809668.
McGarvey T, Rosonina E, McCracken S, Li Q, Arnaout R, Mientjes E, Nickerson JA, Awrey D, Greenblatt J, Grosveld G, Blencowe BJ (2000). "The acute myeloid leukemia-associated protein, DEK, forms a splicing-dependent interaction with exon-product complexes". J. Cell Biol. 150 (2): 309–20. doi:10.1083/jcb.150.2.309. PMC 2180225. PMID 10908574.
Le Hir H, Izaurralde E, Maquat LE, Moore MJ (2000). "The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions". EMBO J. 19 (24): 6860–9. doi:10.1093/emboj/19.24.6860. PMC 305905. PMID 11118221.
Lykke-Andersen J, Shu MD, Steitz JA (2001). "Communication of the position of exon-exon junctions to the mRNA surveillance machinery by the protein RNPS1". Science. 293 (5536): 1836–9. Bibcode:2001Sci...293.1836L. doi:10.1126/science.1062786. PMID 11546874. S2CID 389385.
McCracken S, Lambermon M, Blencowe BJ (2002). "SRm160 splicing coactivator promotes transcript 3'-end cleavage". Mol. Cell. Biol. 22 (1): 148–60. doi:10.1128/MCB.22.1.148-160.2002. PMC 134228. PMID 11739730.
Szymczyna BR, Pineda-Lucena A, Mills JL, Szyperski T, Arrowsmith CH (2002). "1H, 13C, and 15N resonance assignments and secondary structure of the PWI domain from SRm160 using reduced dimensionality NMR". J. Biomol. NMR. 22 (3): 299–300. doi:10.1023/A:1014904502424. PMID 11991360. S2CID 13594831.
Jurica MS, Licklider LJ, Gygi SR, Grigorieff N, Moore MJ (2002). "Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis". RNA. 8 (4): 426–39. doi:10.1017/S1355838202021088. PMC 1370266. PMID 11991638.
Lejeune F, Ishigaki Y, Li X, Maquat LE (2002). "The exon junction complex is detected on CBP80-bound but not eIF4E-bound mRNA in mammalian cells: dynamics of mRNP remodeling". EMBO J. 21 (13): 3536–45. doi:10.1093/emboj/cdf345. PMC 126094. PMID 12093754.
Meissner M, Lopato S, Gotzmann J, Sauermann G, Barta A (2003). "Proto-oncoprotein TLS/FUS is associated to the nuclear matrix and complexed with splicing factors PTB, SRm160, and SR proteins". Exp. Cell Res. 283 (2): 184–95. doi:10.1016/S0014-4827(02)00046-0. PMID 12581738.
Szymczyna BR, Bowman J, McCracken S, Pineda-Lucena A, Lu Y, Cox B, Lambermon M, Graveley BR, Arrowsmith CH, Blencowe BJ (2003). "Structure and function of the PWI motif: a novel nucleic acid-binding domain that facilitates pre-mRNA processing". Genes Dev. 17 (4): 461–75. doi:10.1101/gad.1060403. PMC 196000. PMID 12600940.
Wagner S, Chiosea S, Nickerson JA (2003). "The spatial targeting and nuclear matrix binding domains of SRm160". Proc. Natl. Acad. Sci. U.S.A. 100 (6): 3269–74. Bibcode:2003PNAS..100.3269W. doi:10.1073/pnas.0438055100. PMC 152281. PMID 12624182.
McCracken S, Longman D, Johnstone IL, Cáceres JF, Blencowe BJ (2003). "An evolutionarily conserved role for SRm160 in 3'-end processing that functions independently of exon junction complex formation". J. Biol. Chem. 278 (45): 44153–60. doi:10.1074/jbc.M306856200. PMID 12944400.
Wagner S, Chiosea S, Ivshina M, Nickerson JA (2004). "In vitro FRAP reveals the ATP-dependent nuclear mobilization of the exon junction complex protein SRm160". J. Cell Biol. 164 (6): 843–50. doi:10.1083/jcb.200307002. PMC 2172284. PMID 15024032.
Brill LM, Salomon AR, Ficarro SB, Mukherji M, Stettler-Gill M, Peters EC (2004). "Robust phosphoproteomic profiling of tyrosine phosphorylation sites from human T cells using immobilized metal affinity chromatography and tandem mass spectrometry". Anal. Chem. 76 (10): 2763–72. doi:10.1021/ac035352d. PMID 15144186.