SPATA7

Protein-coding gene in humans
SPATA7
Identifiers
AliasesSPATA7, HEL-S-296, HSD-3.1, HSD3, LCA3, spermatogenesis associated 7
External IDsOMIM: 609868; MGI: 2144877; HomoloGene: 10189; GeneCards: SPATA7; OMA:SPATA7 - orthologs
Gene location (Human)
Chromosome 14 (human)
Chr.Chromosome 14 (human)[1]
Chromosome 14 (human)
Genomic location for SPATA7
Genomic location for SPATA7
Band14q31.3Start88,384,924 bp[1]
End88,470,350 bp[1]
Gene location (Mouse)
Chromosome 12 (mouse)
Chr.Chromosome 12 (mouse)[2]
Chromosome 12 (mouse)
Genomic location for SPATA7
Genomic location for SPATA7
Band12|12 EStart98,594,416 bp[2]
End98,636,074 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right testis

  • sperm

  • left testis

  • Achilles tendon

  • bronchial epithelial cell

  • gonad

  • right uterine tube

  • testicle

  • cerebellar cortex

  • cerebellar hemisphere
Top expressed in
  • spermatid

  • seminiferous tubule

  • spermatocyte

  • secondary oocyte

  • zygote

  • genital tubercle

  • supraoptic nucleus

  • neural tube

  • superior frontal gyrus

  • tail of embryo
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
  • protein binding
Cellular component
  • microtubule cytoskeleton
  • cytoskeleton
  • axoneme
  • cytoplasm
  • ciliary basal body
  • cell projection
  • photoreceptor connecting cilium
  • nucleoplasm
  • mitochondrion
  • cytosol
  • photoreceptor outer segment
Biological process
  • visual perception
  • response to stimulus
  • photoreceptor cell maintenance
  • protein localization to photoreceptor outer segment
  • protein localization to photoreceptor connecting cilium
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

55812

104871

Ensembl

ENSG00000042317

ENSMUSG00000021007

UniProt

Q9P0W8

Q80VP2

RefSeq (mRNA)

NM_001040428
NM_018418

NM_001289572
NM_001289573
NM_001289574
NM_178914

RefSeq (protein)

NP_001035518
NP_060888

NP_001276501
NP_001276502
NP_001276503
NP_849245

Location (UCSC)Chr 14: 88.38 – 88.47 MbChr 12: 98.59 – 98.64 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Spermatogenesis-associated protein 7 is a protein that in humans is encoded by the SPATA7 gene.[5]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000042317 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000021007 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ "Entrez Gene: SPATA7 spermatogenesis associated 7".

Further reading

  • Maruyama K, Sugano S (1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–4. doi:10.1016/0378-1119(94)90802-8. PMID 8125298.
  • Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, et al. (1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–56. doi:10.1016/S0378-1119(97)00411-3. PMID 9373149.
  • Hartley JL, Temple GF, Brasch MA (2001). "DNA cloning using in vitro site-specific recombination". Genome Res. 10 (11): 1788–95. doi:10.1101/gr.143000. PMC 310948. PMID 11076863.
  • Wiemann S, Weil B, Wellenreuther R, et al. (2001). "Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs". Genome Res. 11 (3): 422–35. doi:10.1101/gr.GR1547R. PMC 311072. PMID 11230166.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Heilig R, Eckenberg R, Petit JL, et al. (2003). "The DNA sequence and analysis of human chromosome 14". Nature. 421 (6923): 601–7. Bibcode:2003Natur.421..601H. doi:10.1038/nature01348. PMID 12508121.
  • Zhang X, Liu H, Zhang Y, et al. (2004). "A novel gene, RSD-3/HSD-3.1, encodes a meiotic-related protein expressed in rat and human testis". J. Mol. Med. 81 (6): 380–7. doi:10.1007/s00109-003-0434-y. PMID 12736779. S2CID 21353767.
  • Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
  • Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
  • Wiemann S, Arlt D, Huber W, et al. (2004). "From ORFeome to biology: a functional genomics pipeline". Genome Res. 14 (10B): 2136–44. doi:10.1101/gr.2576704. PMC 528930. PMID 15489336.
  • Mehrle A, Rosenfelder H, Schupp I, et al. (2006). "The LIFEdb database in 2006". Nucleic Acids Res. 34 (Database issue): D415–8. doi:10.1093/nar/gkj139. PMC 1347501. PMID 16381901.


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